Collapse walk-preserving shared affixes in variation graphs in GFA format
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gfa{:bash}
:file
Variation graph in GFA format
*.{gfa}
*.gfa{:bash}
Non-redundant variation graph in GFA 1.0 format
affixes{:bash}
*.txt{:bash}
Shared affixes in tab-separated values (TSV) text format
*.{txt}
versions_gfaffix{:bash}
${task.process}{:bash}
:string
The name of the process
gfaffix{:bash}
The name of the tool
gfaffix --version | cut -d" " -f2{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
