calculate clusters of highly similar sequences
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
db{:bash}
:file
The input sequence database. Supported formats are FASTA and DIAMOND (.dmnd) format.
*.{dmnd,fa,faa,fasta}(.gz)
tsv{:bash}
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
*.tsv{:bash}
a 2-column tabular file with the representative accession as the first column and the member sequence accession as the second column
*.tsv
versions_diamond{:bash}
${task.process}{:bash}
:string
The name of the process
diamond{:bash}
The name of the tool
diamond --version | sed 's/diamond version //g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Accelerated BLAST compatible local sequence aligner
