Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
Input fasta file
*.{fa,fasta,fa.gz,fasta.gz}
taxid_map{:bash}
:file
taxID mapping files are tab-delimited text files used to map custom sequence IDs to NCBI taxonomic identifiers (taxIDs) during the creation of a BLAST database
*.txt
Output
name:type
description
pattern
db{:bash}
meta{:bash}
:map
Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
${prefix}{:bash}
:directory
Output directory containing blast database files
*
versions_makeblastdb{:bash}
${task.process}{:bash}
:string
The name of the process
makeblastdb{:bash}
:string
The name of the tool
makeblastdb -version 2>&1 | sed 's/^.*makeblastdb: //; s/ .*\$//'{:bash}
:eval
The expression to obtain the version of the tool
Topics
name:type
description
pattern
versions{:bash}
${task.process}{:bash}
:string
The name of the process
makeblastdb{:bash}
:string
The name of the tool
makeblastdb -version 2>&1 | sed 's/^.*makeblastdb: //; s/ .*\$//'{:bash}
:eval
The expression to obtain the version of the tool
Tools
blast
US-Government-Work
BLAST finds regions of similarity between biological sequences.
