barrnap uses a hmmer profile to find rrnas in reads or contig fasta files
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fasta{:bash}
:file
fasta file
*.fasta
dbname{:bash}
:string
database to use(bacteria, archaea, eukaryota, metazoan mitochondria)
gff{:bash}
*.gff{:bash}
gff file containing coordinates of genes
*.gff
versions_barrnap{:bash}
${task.process}{:bash}
The name of the process
barrnap{:bash}
The name of the tool
barrnap --version 2>&1 | sed "s/barrnap //g"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes).
